Molecular Parentage Analysis in Aquaculture: Principles, Applications, and Challenges: A Review

References (75)

1. 1 COLONY: a program for parentage and sibship inference from multilocus genotype data [DOI]
2. 2 Automated binning of microsatellite alleles: problems and solutions [DOI]
3. 3 Current trends in microsatellite genotyping [DOI]
4. 4 Merging information in speech recognition: Feedback is never necessary [DOI]
5. 5 Methods of parentage analysis in natural populations [DOI]
6. 6 A practical guide to methods of parentage analysis [DOI]
7. 7 Accurate Prediction of Genetic Values for Complex Traits by Whole-Genome Resequencing [DOI]
8. 8 A review of livestock monitoring and the need for integrated systems [DOI]
9. 9 A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns [DOI]
10. 10 Testing strategies for genomic selection in aquaculture breeding programs [DOI]
11. 11 Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar) [DOI]
12. 12 Atlantic salmon populations invaded by farmed escapees: quantifying genetic introgression with a Bayesian approach and SNPs [DOI]
13. 13 Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing [DOI]
14. 14 Parentage assignment with genomic markers: a major advance for understanding and exploiting genetic variation of quantitative traits in farmed aquatic animals [DOI]
15. 15 A microsatellite-based linkage map of salt tolerant tilapia (Oreochromis mossambicus x Oreochromis spp.) and mapping of sex-determining loci [DOI]
16. 16 Genetic parameters and response to selection in blue mussel (Mytilus galloprovincialis) using a SNP-based pedigree [DOI]
17. 17 DNA fingerprint based analysis of paternal and maternal effects on offspring growth and survival in communally reared rainbow trout [DOI]
18. 18 A simple and affordable method for high‐throughput DNA extraction from animal tissues for polymerase chain reaction [DOI]
19. 19 FAP: an exclusion‐based parental assignment program with enhanced predictive functions [DOI]
20. 20 Temperature effects and genotype‐temperature interactions on sex determination in the European sea bass (Dicentrarchus labrax L.) [DOI]
21. 21 Estimates of heritability and genotype–environment interactions for body weight in sea bass (Dicentrarchus labrax L.) raised under communal rearing conditions [DOI]
22. 22 Microsatellite standardization and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar L.) [DOI]
23. 23 Genetic analysis of two common carp broodstocks by RAPD and microsatellite markers [DOI]
24. 24 Phylogeography of Two Moray Eels Indicates High Dispersal Throughout the Indo-Pacific [DOI]
25. 25 Capillary Electrophoresis Is Essential for Microsatellite Marker Based Detection and Quantification of Adulteration of Basmati Rice ( Oryza sativa) [DOI]
26. 26 Stable isotope profiles in whale shark (Rhincodon typus) suggest segregation and dissimilarities in the diet depending on sex and size [DOI]
27. 27 Mapping spatial and temporal patterns of Mediterranean wildfires from MODIS [DOI]
28. 28 Estimates of heritability and genetic correlation for body length and resistance to fish pasteurellosis in the gilthead sea bream (Sparus aurata L.) [DOI]
29. 29 A comparison of communal and separate rearing of families in selective breeding of common carp (Cyprinus carpio): Estimation of genetic parameters [DOI]
30. 30 Broodstock contribution after mass spawning and size grading in barramundi (Lates calcarifer, Bloch) [DOI]
31. 31 From theory to practice: Empirical evaluation of the assignment power of marker sets for pedigree analysis in fish breeding [DOI]
32. 32 Can the Global Adoption of Genetically Improved Farmed Fish Increase Beyond 10%, and How? [DOI]
33. 33 Practical Considerations of Molecular Parentage Analysis in Fish [DOI]
34. 34 The Posterior Ventral Tegmental Area Mediates Alcohol-Seeking Behavior in Alcohol-Preferring Rats [DOI]
35. 35 Explaining Rapid Transitions in the Practice of Flood Risk Management [DOI]
36. 36 Early individual electronic identification of sea bass using RFID microtags: A first example of early phenotyping of sex-related growth [DOI]
37. 37 Application of automated DNA sizing technology for genotyping microsatellite loci [DOI]
38. 38 Estimates of phenotypic and genetic parameters for flesh colour traits in farmed Atlantic salmon based on multiple trait animal model [DOI]
39. 39 Comparison of three DNA marker systems for assessing genetic diversity in Asian arowana (Scleropages formosus) [DOI]
40. 40 Molecular Parentage Analysis Is Essential in Breeding Asian Seabass [DOI]
41. 41 e-tendering in construction: time for a change?
42. 42 Mouth and fin deformities in common carp: is there a genetic basis? [DOI]
43. 43 Side effects of sexual maturation on heritability estimates in rainbow trout (Oncorhynchus mykiss) [DOI]
44. 44 Scabrous and Gp150 are endosomal proteins that regulate Notch activity [DOI]
45. 45 Setting up a strain-testing design for the seabass, Dicentrarchus labrax: a simulation study [DOI]
46. 46 Minimizing maternal effect in salmonid families mixed since eyed stages and a posteriori DNA-pedigreed [DOI]
47. 47 Strategies for controlling inbreeding in fish breeding programs; an applied approach using optimum contribution (OC) procedures [DOI]
48. 48 A simple selection scheme to improve disease resistance and growth [DOI]
49. 49 Estimation of Breeding Values Using Selected Pedigree Records [DOI]
50. 50 Cloning and expression of a rat Smad1: Regulation by TGF� and modulation by the ras/MEK pathway [DOI]
51. 51 ANNALS OF THE ASSOCIATION OF AMERICAN GEOGRAPHERS
52. 52 Molecular Markers, Natural History, and Evolution [DOI]
53. 53 Microsatellite markers: what they mean and why they are so useful [DOI]
54. 54 Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters [DOI]
55. 55 The Development of SSM/I Rain-Rate Retrieval Algorithms Using Ground-Based Radar Measurements [DOI]
56. 56 A global view of aquaculture policy [DOI]
57. 57 gimlet: a computer program for analysing genetic individual identification data [DOI]
58. 58 Mastering DNA chromatogram analysis in Sanger sequencing for reliable clinical analysis [DOI]
59. 59 Microsatellites as Molecular Markers with Applications in Exploitation and Conservation of Aquatic Animal Populations [DOI]
60. 60 Genomic selection in salmonids: new discoveries and future perspectives [DOI]
61. 61 An evaluation of allowing for mismatches as a way to manage genotyping errors in parentage assignment by exclusion [DOI]
62. 62 Breeding Technology as a Tool for Sustainable Aquaculture Production and Ecosystem Services [DOI]
63. 63 Changes in genetic diversity of Asian seabass in a 20-year breeding program [DOI]
64. 64 Using genomic relationship likelihood for parentage assignment [DOI]
65. 65 Temporal and region‐specific variations in genome‐wide inbreeding effects on female size and reproduction traits of rainbow trout [DOI]
66. 66 Comparison of microsatellites and SNPs for pedigree analysis in the Pacific oyster Crassostrea gigas [DOI]
67. 67 ‘apparent’: a simple and flexible R package for accurate SNP-based parentage analysis in the absence of guiding information [DOI]
68. 68 Development and evaluation of a high-throughput single nucleotide polymorphism multiplex assay for assigning pedigrees in common carp [DOI]
69. 69 Prevalence of bacterial infections and the use of multiplex PCR assay for rapid detection of pathogens in cultured fish in Ghana [DOI]
70. 70 Impact of phenotypic information and composition of reference population on genomic prediction in fish under the presence of genotype by environment interaction [DOI]
71. 71 Ligation-mediated PCR with a back-to-back adapter reduces amplification bias resulting from variations in GC content [DOI]
72. 72 Growth parameters in juvenile gold severum (Heros severus) fed diets containing fish oil and soybean oil
73. 73 Performance comparison of gel and capillary electrophoresis-based microsatellite genotyping strategies in a population research and kinship testing framework [DOI]
74. 74 Evaluating the effect of dietary soybean oil on growth performances of juvenile severum (Heros severus)
75. 75 A multiplexed RT-PCR assay for nanopore whole genome sequencing of Tilapia lake virus (TiLV) [DOI]

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